Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs75165920 chr7:6743332 T/A 3.47E-7 491 31.07 26.37 50.03 KM Plot
PRAD rs7518641 chr1:31761649 A/G 1.82E-6 493 22.85 31.25 31.27 KM Plot
PRAD rs7519427 chr1:6719883 T/C 0.000128 493 29.97 31.13 30.73 KM Plot
PRAD rs75196020 chr2:241750301 C/A 1.69E-6 488 29.52 32.7 26.78 KM Plot
PRAD rs75256526 chr5:154129052 G/A 0 490 29.8 35.57 4.87 KM Plot
PRAD rs75261676 chr9:124294752 G/C 0.000141 488 31 31.43 20.98 KM Plot
PRAD rs75276993 chr9:72828932 G/T 1.72E-5 494 30.8 31.35 22.45 KM Plot
PRAD rs75291737 chr4:165647524 T/C 6.27E-5 486 30.97 32.15 44.32 KM Plot
PRAD rs75311361 chr15:83231336 T/C 2.1E-5 477 31.23 30.3 28.02 KM Plot
PRAD rs75315926 chr9:72887456 C/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs75323029 chr5:154230910 C/A 0 493 29.63 38.33 4.87 KM Plot
PRAD rs75326307 chr5:154179340 A/G 1.12E-8 489 30.27 32.63 20.47 KM Plot
PRAD rs7532813 chr1:31828257 G/C 8.14E-6 494 22.87 31.27 30.97 KM Plot
PRAD rs75329232 chr2:107442697 T/A 3.32E-5 491 30.97 30.27 32.63 KM Plot
PRAD rs7533667 chr1:31788246 A/G 8.29E-6 494 31 31.27 22.87 KM Plot